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Step 1
Season beef all over with salt and pepper; set aside and let sit for at least 45 minutes before cooking.
Step 2
Meanwhile, in a large Dutch oven, heat lard or olive oil over medium-high heat until shimmering. Add carrots and celery, and cook, stirring occasionally, until softened but not browned, about 5 minutes. Add roughly 1/3 of the onions (about 1 pound; 450g), season lightly with salt, and continue to cook, stirring occasionally, until onions are also softened but not browned, about 5 minutes.
Step 3
Add tomato paste and 1/4 cup (60ml) wine. Use a wooden spoon to stir and scrape the bottom and sides of the pot to release any stuck-on bits, then spread onion mixture into an even layer covering bottom of the pot. Reduce heat to medium-low and add beef, nestling pieces into onion mixture in a single layer. Cover beef with remaining onions (about 2 pounds; 900g), add bay leaf, season lightly with salt, and cover pot with lid.
Step 4
Cook, uncovering and stirring occasionally to ensure vegetables and beef aren't sticking to bottom of the pot, until onions are very soft and have released their moisture, about 1 hour. Adjust heat as needed to maintain a gentle, steady simmer, and try to keep a layer of onion mixture between beef and bottom of the pot.
Step 5
Crack lid slightly so that pot is not completely covered and continue to cook until beef is tender, offering little resistance when pressed with a wooden spoon or poked with a paring knife, about 1 hour and 30 minutes longer. Using tongs, remove beef and bay leaf; set beef aside to cool slightly and discard bay leaf.
Step 6
Add remaining 3/4 cup (180ml) wine and cherry tomatoes (if using) to onion mixture and bring to a simmer over medium-low heat. Once beef is cool enough to handle, cut into 1 1/2-inch pieces and add back to the pot. Season with salt to taste and cook, stirring occasionally, until tomatoes begin to burst and mixture is reduced to a saucy braised ragù consistency, about 15 minutes. You can coax the beef pieces into breaking down slightly by prodding them with a wooden spoon, but don't overdo it; the goal is to have a mixture of distinct pieces of beef and some shredded bits that meld into the sauce.
Step 7
Meanwhile, in a pot of salted boiling water, cook pasta until just shy of al dente (1 to 2 minutes less than the package directs). Using a spider skimmer, transfer pasta to the sauce, along with 1/2 cup (120ml) pasta cooking water. Alternatively, drain pasta using a colander or fine-mesh strainer, making sure to reserve at least 1 cup (240ml) pasta cooking water.
Step 8
Increase heat to high and cook, stirring rapidly, until pasta is al dente and sauce is thickened and coats noodles, 1 to 2 minutes, adding more pasta water in 1/4 cup (60ml) increments as needed. Remove from heat, add parsley, and stir rapidly to incorporate. Season with salt to taste. Serve immediately, passing grated cheese at the table.