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Step 1
Preheat oven to 375°F and brush the bottom of a 9x12-baking dish with olive oil.
Step 2
Set the sliced squash on a kitchen towel to drain some of the excess moisture while you prep everything else.
Step 3
In a large bowl, toss the zucchini and onions with the pesto.
Step 4
Layer the baking dish with the marinara sauce, followed by the zucchini mixture. Spread the zucchini into one even layer.
Step 5
Sprinkle the top with the panko, Parmesan, a drizzle of olive oil, and pinches of red pepper flakes. Bake until the zucchini is tender (but not mushy) and the top is crispy and lightly browned - about 25 minutes. I like to turn my broiler on for the last few minutes to help the topping become browned and crisp.
Step 6
Remove from oven and let it cool 20 minutes before slicing.